Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162248124|gb|FC420844.1|FC420844EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST:
gi|100385103|gb|BY987566.1|BY987566EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST:
gi|162267860|gb|FC444461.1|FC444461EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcagagctcaactaaattttcagatcgctttaccactgaactttatactagggttttatggttgttcaattgtattttcagatatatgcaaatcaaaggaatttggattgggcaaaaacttacatagtgactgcattgatgaatttgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTGGTTGGTGGGACGTTTGCGATCTTTCTGCTGCAACTTTATTACTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG