Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctactcaaattgagtgaaaaaagacactgagttacgcgcaggttttctctaatatctatactcttgatttagaactgaatgcgtgtccatttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGA

Basic information

species Physcomitrella patens
transcript PP1S95_118V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385103|gb|BY987566.1|BY987566
EST:     TGTGAAAGGATGGCAGGATCTTGGATTTGAGTGAAGGTTTAATGAAAGGG                         ATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
genomic: TGTGAAAGGATGGCAGGATCTTGGATTTGAGTGAAGGTTTAATGAAAGGGgcatgtgcct ... atttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctaatatctatactcttgatttagaactgaatgcgtgtccatttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGA
                                          tccatttct  CT-rich tract
      taatatctata  TA-rich tract