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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctactcaaattgagtgaaaaaagacactgagttacgcgcaggttttctctaatatctatactcttgatttagaactgaatgcgtgtccatttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGA

Basic information

species Physcomitrella patens
transcript PP1S95_118V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18350479|gb|BJ182530.1|BJ182530
EST:     GGCTCAGCGCTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAG                         ATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
genomic: GGCTCAGCGCTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAGgtaggtcttc ... atttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
EST: gi|208393923|gb|DC938478.1|DC938478
EST:     GGGCTCAGCGCTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAG                         ATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
genomic: GGGCTCAGCGCTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAGgtaggtcttc ... atttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
EST: gi|162248124|gb|FC420844.1|FC420844
EST:     CTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAG                         ATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG
genomic: CTTGGTGGCGACCCCCAGTGCGCTCTGGCGTTTGTCGGAGgtaggtcttc ... atttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctaatatctatactcttgatttagaactgaatgcgtgtccatttctgcagATTTCAAGCGCCACTTTCAAGCCTGTGAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGA
                                          tccatttct  CT-rich tract
      taatatctata  TA-rich tract