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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGACCATGGCTGTGGTCGATGAGGCAAGGGATCCCGTGTACCGCTTGTCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttcttctacttctgctatttattgatgagtgtcacgctggtcaatttgtgtacagacgaggaggataatcgttgtcaaccttcgtcttttgaaag...

Basic information

species Physcomitrella patens
transcript PP1S95_116V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100366857|gb|BY948245.1|BY948245
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100366857|gb|BY948245.1|BY948245
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100366857|gb|BY948245.1|BY948245
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100366857|gb|BY948245.1|BY948245
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100366857|gb|BY948245.1|BY948245
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100390856|gb|BY989339.1|BY989339
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100390856|gb|BY989339.1|BY989339
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100390856|gb|BY989339.1|BY989339
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100390856|gb|BY989339.1|BY989339
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100390856|gb|BY989339.1|BY989339
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|100380418|gb|BY986688.1|BY986688
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         TATGCAGGTAGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAA
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacagTATGCAGGT-GCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAA
EST: gi|100379014|gb|BY986531.1|BY986531
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         TATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAG
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacagTATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAG
EST: gi|162205194|gb|FC381292.1|FC381292
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|162205194|gb|FC381292.1|FC381292
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|162205194|gb|FC381292.1|FC381292
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|162205194|gb|FC381292.1|FC381292
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: gi|162205194|gb|FC381292.1|FC381292
EST:     TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG                         A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-