1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcgcatttgtttttcttgtatgtactcgggccacctctgcttcacattttcatgacgccaagtcatggtctaatccctgtgtttgcatgttgtagacagTATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAGTCTTTTCAAACTGGCAGTTGGTAATTTAGCAGTTCGTAGTCAGGGGCGT
species | Physcomitrella patens |
transcript | PP1S95_116V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100366857|gb|BY948245.1|BY948245
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100366857|gb|BY948245.1|BY948245
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100366857|gb|BY948245.1|BY948245
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100366857|gb|BY948245.1|BY948245
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100390856|gb|BY989339.1|BY989339
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100390856|gb|BY989339.1|BY989339
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100390856|gb|BY989339.1|BY989339
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100390856|gb|BY989339.1|BY989339
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100390856|gb|BY989339.1|BY989339
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|100380418|gb|BY986688.1|BY986688
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG TATGCAGGTAGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAEST: gi|100379014|gb|BY986531.1|BY986531
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacagTATGCAGGT-GCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAA
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG TATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAGEST: gi|162205194|gb|FC381292.1|FC381292
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacagTATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAG
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|162205194|gb|FC381292.1|FC381292
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|162205194|gb|FC381292.1|FC381292
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|162205194|gb|FC381292.1|FC381292
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG AEST: gi|162205194|gb|FC381292.1|FC381292
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
EST: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAG A
genomic: TCATGTTGGATCTCGTGCCGATTGCCCACCAATCTGGACCCCATTTTCAGgtttcttctt ... ttgtagacag-
cattttcatgacgccaagtcatggtctaatccctgtgtttgcatgttgtagacagTATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAGTCTTTTCAAACTGGCAGTTGGTAATTTAGCAGTTCGTAGTCAGGGGCGT
gtctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgcatttgtttttcttgtatgtactcgggccacctctgcttcacattttcatgacgccaagtcatggtctaatccctgtgtttgcatgttgtagacagTATGCAGGTGCAGCCTTCAATGCTTGTGCAGAGGTACTCGGTTGACAAAAGTCTTTTCAAACTGGCAGTTGGTAATTTAGCAGTTCGTAGTCAGGGGCGT
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