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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgagaagaatcgcctgtacgtcttattttatctcataatgaagattttgttggttcttgtcgctaatctttttggcaccgggggtgcttgctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTGTGCGTTGATTGCTTGTGCAGGGATTTTGGGCAACAGTCGAGGAGATAAT

Basic information

species Physcomitrella patens
transcript PP1S94_94V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181167|gb|FC357612.1|FC357612
EST:     GTGCAGTAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162168688|gb|FC343950.1|FC343950
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162165554|gb|FC340665.1|FC340665
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162198824|gb|FC374307.1|FC374307
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162173409|gb|FC349788.1|FC349788
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162198825|gb|FC374308.1|FC374308
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162176483|gb|FC353876.1|FC353876
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162164765|gb|FC340487.1|FC340487
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162152123|gb|FC328713.1|FC328713
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162183546|gb|FC359839.1|FC359839
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|15590658|gb|BI675274.1|BI675274
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162158285|gb|FC334704.1|FC334704
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162173410|gb|FC349789.1|FC349789
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|67695516|gb|BJ955749.1|BJ955749
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162165224|gb|FC341700.1|FC341700
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162198630|gb|FC373437.1|FC373437
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162180528|gb|FC356170.1|FC356170
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162152865|gb|FC328959.1|FC328959
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162150652|gb|FC327548.1|FC327548
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162149942|gb|FC326265.1|FC326265
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162181168|gb|FC357613.1|FC357613
EST:     GTGCAGTAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162174119|gb|FC350322.1|FC350322
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162191389|gb|FC367132.1|FC367132
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162160795|gb|FC336694.1|FC336694
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCT-AAAACCTGATCA
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCA
EST: gi|162165223|gb|FC341699.1|FC341699
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162149903|gb|FC326226.1|FC326226
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162152866|gb|FC328960.1|FC328960
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162199154|gb|FC374600.1|FC374600
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162255497|gb|FC431287.1|FC431287
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162165601|gb|FC341440.1|FC341440
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162181385|gb|FC357102.1|FC357102
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162185191|gb|FC361701.1|FC361701
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162245146|gb|FC422946.1|FC422946
EST:     GTGCAGCANACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTANA-CCTGATCAGGATAATACCTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTG
EST: gi|162173217|gb|FC349999.1|FC349999
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162174990|gb|FC350889.1|FC350889
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162192477|gb|FC368613.1|FC368613
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162158286|gb|FC334705.1|FC334705
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162271688|gb|FC448613.1|FC448613
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162164336|gb|FC341514.1|FC341514
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162150061|gb|FC326592.1|FC326592
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162160794|gb|FC336693.1|FC336693
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162181011|gb|FC358665.1|FC358665
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162160990|gb|FC337508.1|FC337508
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTANAACCTGATCAGGATAATACCTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTG
EST: gi|162176484|gb|FC353877.1|FC353877
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162163762|gb|FC339815.1|FC339815
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162164335|gb|FC341513.1|FC341513
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162151406|gb|FC326911.1|FC326911
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162172027|gb|FC347942.1|FC347942
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162185192|gb|FC361702.1|FC361702
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162157250|gb|FC332884.1|FC332884
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCA
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCA
EST: gi|162150653|gb|FC327549.1|FC327549
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162186343|gb|FC361651.1|FC361651
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162165555|gb|FC340666.1|FC340666
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162186342|gb|FC361650.1|FC361650
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162198713|gb|FC373481.1|FC373481
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162174120|gb|FC350323.1|FC350323
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162172026|gb|FC347941.1|FC347941
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162165600|gb|FC341439.1|FC341439
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162157249|gb|FC332883.1|FC332883
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162225137|gb|FC401761.1|FC401761
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162159792|gb|FC335837.1|FC335837
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162155380|gb|FC331994.1|FC331994
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162166359|gb|FC342341.1|FC342341
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162197994|gb|FC373996.1|FC373996
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162245145|gb|FC422945.1|FC422945
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162164190|gb|FC339613.1|FC339613
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162227202|gb|FC402832.1|FC402832
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162192478|gb|FC368614.1|FC368614
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162197995|gb|FC373997.1|FC373997
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162197037|gb|FC375236.1|FC375236
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTACGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162160421|gb|FC337422.1|FC337422
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162157348|gb|FC333463.1|FC333463
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162164764|gb|FC340486.1|FC340486
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162159791|gb|FC335836.1|FC335836
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162151407|gb|FC326912.1|FC326912
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162183545|gb|FC359838.1|FC359838
EST:     CAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTNATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: CAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162224404|gb|FC399585.1|FC399585
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162181386|gb|FC357103.1|FC357103
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162160989|gb|FC337507.1|FC337507
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
EST: gi|162254292|gb|FC430011.1|FC430011
EST:     GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTCTTATAGATGT                         GCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG
genomic: GTGCAGCAAACTACACATCACCGAGGAAGCTTGTCATGTTTTATAGATGTgtaagtatct ... ctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttggttcttgtcgctaatctttttggcaccgggggtgcttgctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTGTGCGTTGATTGCTTGTGCAGGGATTTTGGGCAACAGTCGAGGAGATAAT
               cgctaat  putative branch site (score: 3)
                                         cttgcttt  putative PPT
                  taatcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgagaagaatcgcctgtacgtcttattttatctcataatgaagattttgttggttcttgtcgctaatctttttggcaccgggggtgcttgctttgagcagGCTGAGAGAGTCCCTTAAAACCTGATCAGGATAATACCTGCGAAGGGAGTGTGCGTTGATTGCTTGTGCAGGGATTTTGGGCAACAGTCGAGGAGATAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT