Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGCGGAGGACGCGATTGTGAAGCACACGCGGGAGGTGGTGCCTGGCATGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttgaatttgctgtctattctgtttccttttttgtacattccttcctaacctgcaaccgttgcattgcaattcttgagcattaactcgtttgttcatatcatttctaacctatttgtcggtgatcag

Basic information

species Physcomitrella patens
transcript PP1S94_94V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209614|gb|FC385918.1|FC385918
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162198825|gb|FC374308.1|FC374308
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162164765|gb|FC340487.1|FC340487
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162161248|gb|FC337311.1|FC337311
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162239504|gb|FC417969.1|FC417969
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162247422|gb|FC423116.1|FC423116
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162181012|gb|FC358666.1|FC358666
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162173410|gb|FC349789.1|FC349789
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162191230|gb|FC367908.1|FC367908
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GNGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162158529|gb|FC334532.1|FC334532
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162199486|gb|FC374087.1|FC374087
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162181168|gb|FC357613.1|FC357613
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162160795|gb|FC336694.1|FC336694
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162152866|gb|FC328960.1|FC328960
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162224405|gb|FC399586.1|FC399586
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162168616|gb|FC343878.1|FC343878
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162152440|gb|FC328003.1|FC328003
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162161187|gb|FC337250.1|FC337250
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAANGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162165601|gb|FC341440.1|FC341440
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162245146|gb|FC422946.1|FC422946
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162158286|gb|FC334705.1|FC334705
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162155381|gb|FC331995.1|FC331995
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162164336|gb|FC341514.1|FC341514
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162160990|gb|FC337508.1|FC337508
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162176484|gb|FC353877.1|FC353877
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162180869|gb|FC358370.1|FC358370
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162176582|gb|FC353051.1|FC353051
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162172027|gb|FC347942.1|FC347942
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162185192|gb|FC361702.1|FC361702
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162174991|gb|FC350890.1|FC350890
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162157250|gb|FC332884.1|FC332884
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162150653|gb|FC327549.1|FC327549
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162173583|gb|FC350157.1|FC350157
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162186343|gb|FC361651.1|FC361651
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162165555|gb|FC340666.1|FC340666
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162179563|gb|FC356603.1|FC356603
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162191357|gb|FC368153.1|FC368153
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162174120|gb|FC350323.1|FC350323
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162185412|gb|FC361181.1|FC361181
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162168474|gb|FC344125.1|FC344125
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162159792|gb|FC335837.1|FC335837
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162166359|gb|FC342341.1|FC342341
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162164190|gb|FC339613.1|FC339613
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162172514|gb|FC348559.1|FC348559
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GNGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162192478|gb|FC368614.1|FC368614
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162197995|gb|FC373997.1|FC373997
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162150062|gb|FC326593.1|FC326593
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATT-G
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162271112|gb|FC446113.1|FC446113
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162151407|gb|FC326912.1|FC326912
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162255498|gb|FC431288.1|FC431288
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162197558|gb|FC375731.1|FC375731
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162224404|gb|FC399585.1|FC399585
EST:     GGTCCCCACG-ATGG                         GGGCC-ACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTT
genomic: GGTCCCCACGAAT-Ggtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTT
EST: gi|162188209|gb|FC364703.1|FC364703
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162181386|gb|FC357103.1|FC357103
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162161839|gb|FC337941.1|FC337941
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162151557|gb|FC327270.1|FC327270
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG
EST: gi|162246392|gb|FC422424.1|FC422424
EST:     TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG                         GGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCACATTTG
genomic: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttga ... cggtgatcagGGGCCAACTTTTGGAGCGATGATGATATCTGGACAGAAGGCGGCGCATTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGCGGAGGACGCGATTGTGAAGCACACGCGGGAGGTGGTGCCTGGCATGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATGgtgcggttgaatttgctgtctattctgtttccttttttgtacattccttcctaacctgcaaccgttgcattgcaattcttgagcattaactcgtttgttcatatcatttctaacctatttgtcggtgatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC