1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgctttatgcttggaatacttttgctctagaaatgtaattaatgtctattgagtaatgacttgtgaatttagtacattaatctcctgttctgatgttttctcgttgatgtttgtaattcagTTGCCTTGCAGAGGGTGCTGAAGATTTCCTTATTAAACCTGTACAGTTGGAAGATGTTCAGCGGCTGCATGGTCACATGAGATCCTCTGCCGCATCTTCT
species | Physcomitrella patens |
transcript | PP1S94_88V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACCAGTTATTGTGATGTCATCAGAAAATGACAGCAATCGCATTAAAAG T-GCCTTGCAGAGGGTGC
genomic: TTACCAGTTATTGTGATGTCATCAGAAAATGACAGCAATCGCATTAAAAGgtatgcttta ... tgtaattcagTTGCCTTGCAGAGGGTGC
atttagtacattaatctcctgttctgatgttttctcgttgatgtttgtaattcagTTGCCTTGCAGAGGGTGCTGAAGATTTCCTTATTAAACCTGTACAGTTGGAAGATGTTCAGCGGCTGCATGGTCACATGAGATCCTCTGCCGCATCTTCT
tacattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttatgcttggaatacttttgctctagaaatgtaattaatgtctattgagtaatgacttgtgaatttagtacattaatctcctgttctgatgttttctcgttgatgtttgtaattcagTTGCCTTGCAGAGGGTGCTGAAGATTTCCTTATTAAACCTGTACAGTTGGAAGATGTTCAGCGGCTGCATGGTCACATGAGATCCTCTGCCGCATCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC