1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTACAACTGTGAACAGTGCCTTGAGAGCATTGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAATgtaagtattttttttgacgtttaaatttctaaaatatgtattatctcacaagcgaaaatacatacgatgtgatgctgttgctttgtgaagtgaaccatgtaactgattgaattcttcatctcatttgcag
species | Physcomitrella patens |
transcript | PP1S94_88V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAAT AAAGGGGCTGTGAATCTTATCATGACGGACTATTGTATGCCGGGGATGACTEST: gi|162277876|gb|FC454339.1|FC454339
genomic: TGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAATgtaagtattt ... tcatttgcagAAAGGGGCTGTGAATCTTATCATGACGGACTATTGTATGCCGGGGATGACT
EST: TGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAAT AAAGGGGCTGTGAATCTTATCATGACGGACTATTGTATGCCGGGGATGACT
genomic: TGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAATgtaagtattt ... tcatttgcagAAAGGGGCTGTGAATCTTATCATGACGGACTATTGTATGCCGGGGATGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAACTGTGAACAGTGCCTTGAGAGCATTGGAGTATCTGGGACTTTCTGAAAGCTGCTCCTCCTCAGGGAAGCCAAATgtaagtattttttttgacgtttaaatttctaaaatatgtattatctcacaagcgaaaatacatacgatgtgatgctgttgctttgtgaagtgaaccatgtaactgattgaattcttcatctcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC