1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatttttgtctcattcaatctcctgcattgatttccaagttttagaagttgaatggaaaccggcatagacgtcggatacaaaaacaggtcatatcaaagtattagattgttgaagtttataaagaatctaataggaagttaatttgatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGGACATCGAAGTCGTCACTTGCGGACAAAGAGAGCTGATCAGTGATTAAA
species | Physcomitrella patens |
transcript | PP1S94_48V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATG TTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGEST: gi|37835971|gb|BJ593983.1|BJ593983
genomic: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATGgtatttttgt ... gatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
EST: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATG TTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGEST: gi|162174665|gb|FC351353.1|FC351353
genomic: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATGgtatttttgt ... gatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
EST: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATG TTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGEST: gi|37829208|gb|BJ587220.1|BJ587220
genomic: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATGgtatttttgt ... gatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
EST: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATG TTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGEST: gi|37829608|gb|BJ587620.1|BJ587620
genomic: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATGgtatttttgt ... gatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
EST: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATG TTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
genomic: TCCAAAGCATACGAGTCAAGAGCGAACCAGTCTCCAACAAGTTTTTCATGgtatttttgt ... gatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTG
attagattgttgaagtttataaagaatctaataggaagttaatttgatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGGACATCGAAGTCGTCACTTGCGGACAAAGAGAGCTGATCAGTGATTAAA
aagtttataaagaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttgtctcattcaatctcctgcattgatttccaagttttagaagttgaatggaaaccggcatagacgtcggatacaaaaacaggtcatatcaaagtattagattgttgaagtttataaagaatctaataggaagttaatttgatcacacagTTACCAAGGAGACAATGCGCCAAGCTTTTGGAAACAAGAAACCACGTGTTGGACATCGAAGTCGTCACTTGCGGACAAAGAGAGCTGATCAGTGATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT