1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttttttttgttttttttgtttttttttgcgtggatgagtgttttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
species | Physcomitrella patens |
transcript | PP1S94_48V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAG TTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTEST: gi|162174666|gb|FC351354.1|FC351354
genomic: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAGgtgagatatc ... cccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
EST: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAG TTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
genomic: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAGgtgagatatc ... cccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
ttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
ttctcac putative branch site (score: 4)
ttctcacctccatttc CT-rich tract
tttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttttgttttttttgtttttttttgcgtggatgagtgttttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT