Sequence
atgc intronic sequence ATGC exonic sequence...tttttttttttgttttttttgtttttttttgcgtggatgagtgttttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
Basic information
species | Physcomitrella patens |
transcript | PP1S94_48V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19788959|gb|BQ041018.1|BQ041018EST: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAG TTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
genomic: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAGgtgagatatc ... cccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
EST:
gi|162174666|gb|FC351354.1|FC351354EST: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAG TTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
genomic: GCATTACTGAACTTGGCGTCCCTTTGACCAAAGAACCAGGGTTTCACCAGgtgagatatc ... cccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
ttctcac putative branch site (score: 2)
ttctcacctccatttc CT-rich tract
tttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttttttttgttttttttgtttttttttgcgtggatgagtgttttccctgtttcttacccgcgttctcacctccatttctgtctcttgcccaatgcagTTCGATATTTTCGGCAACGCGCATGGCCTACTTGCGTCTCATCCATTGACTCCCTTCATCTCTATCCATCATTTGGAGCTTTTGGATCCGGTCTTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT