1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTTGCAGATGGCGGCCTGACACGCTGGTAGTGGGCGTCGCTGTCATCCTCTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGGgtgcgtgattgtggattttggttttgagtggtgtgttagctgtttttgtggagcgaagtggagttgcctctcagcttgaatgatttgagcgggcgaccgg...
species | Physcomitrella patens |
transcript | PP1S94_26V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGG GTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAAEST: gi|100451643|gb|CJ974869.1|CJ974869
genomic: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGGgtgcgtgatt ... gtctttatagGTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAA
EST: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGG GTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAAEST: gi|18360505|gb|BJ192568.1|BJ192568
genomic: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGGgtgcgtgatt ... gtctttatagGTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAA
EST: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGG GTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAA
genomic: CTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGGgtgcgtgatt ... gtctttatagGTGGTCAACACAGGAGTTAGGGAGTTAGCGTGCTGTTGAGCGATTGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGCAGATGGCGGCCTGACACGCTGGTAGTGGGCGTCGCTGTCATCCTCTGCCAGGCGGAGCATCGCAGCGTATTGGCTCGTTTTTCCTACGCAGCGGgtgcgtgattgtggattttggttttgagtggtgtgttagctgtttttgtggagcgaagtggagttgcctctcagcttgaatgatttgagcgggcgaccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA