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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttttaaatgggtttgttcaggattttaggttctataagcttaaagttggtatgatcatgcacctttgctcgttgatttgatttttttagttataagcacctgtgtgttgactgtgtgtttgcagGTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA

Basic information

species Physcomitrella patens
transcript PP1S94_163V6.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788183|gb|BQ040734.1|BQ040734
EST:     ACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAG                         GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA
genomic: ACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAGgtgtgttttt ... gtgtttgcagGTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA
EST: gi|37823437|gb|BJ581503.1|BJ581503
EST:     ACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAG                         GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA
genomic: ACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAGgtgtgttttt ... gtgtttgcagGTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgatttgatttttttagttataagcacctgtgtgttgactgtgtgtttgcagGTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA
                                   tgttgac  putative branch site (score: 3)
     atttgatttttttagt  TA-rich tract