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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttactcattcggacttaatgtggatcattgcatcctgcctggtaaccttatacctgttttgaaacctctgaataatgggataaatgtcatgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAG

Basic information

species Physcomitrella patens
transcript PP1S94_163V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788183|gb|BQ040734.1|BQ040734
EST:     TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACA                         GTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
genomic: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtccta ... tgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
EST: gi|37823437|gb|BJ581503.1|BJ581503
EST:     TGGCGCAGATATTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACA                         GTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
genomic: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtccta ... tgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttatacctgttttgaaacctctgaataatgggataaatgtcatgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGCCTCGACTGGGAAAG
 tggtaac  putative branch site (score: 2)
            ttttgaaa  TA-rich tract