1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgtgcagtcactttgagctttttctcagctactttgctgcctttgatattgaggtaatttaagacatgtgtttctaatacaatttttttgctttgttttgtttcgtttcttttttgttttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCTGCTCCCATGGACATCACGTTCTCGCGCGGGATTGATCCGAATGTAGTC
species | Physcomitrella patens |
transcript | PP1S94_113V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162269262|gb|FC444779.1|FC444779
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162170709|gb|FC346296.1|FC346296
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162178527|gb|FC354979.1|FC354979
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162176692|gb|FC352537.1|FC352537
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162168477|gb|FC344128.1|FC344128
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162256947|gb|FC433257.1|FC433257
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCEST: gi|162156226|gb|FC332601.1|FC332601
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
EST: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTA CGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
genomic: GATTGGTCTATAAAGCCCATCGACGTCCGCCATCCCTTCAAATTCTACTAgtgagtgtgc ... tttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCC
tctaatacaatttttttgctttgttttgtttcgtttcttttttgttttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCTGCTCCCATGGACATCACGTTCTCGCGCGGGATTGATCCGAATGTAGTC
ttctaat putative branch site (score: 2)
tttttttgctttgttt putative PPT
tttcttttttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtgcagtcactttgagctttttctcagctactttgctgcctttgatattgaggtaatttaagacatgtgtttctaatacaatttttttgctttgttttgtttcgtttcttttttgttttatgtcagCGGCCATATCCAGGCCTTCGCCAAGCTCAAGCTTCTTACCAATGAGCCTCCTGCTCCCATGGACATCACGTTCTCGCGCGGGATTGATCCGAATGTAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA