1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgaaatcctgtatattttatatataataattcaaattttgcaactagattgtggggtaaagacagaaattctgtttataacgaagttatgaaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATTTACTCGAAACTAAAGGTCGCGCTATCATTTGTGTAGCTGAGGGTGCCG
species | Physcomitrella patens |
transcript | PP1S94_106V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATEST: gi|37852524|gb|BJ610532.1|BJ610532
genomic: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
EST: TCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATEST: gi|7648346|gb|AW739329.1|AW739329
genomic: TCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
EST: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATEST: gi|7648257|gb|AW739240.1|AW739240
genomic: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
EST: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATEST: gi|100428968|gb|BY959524.1|BY959524
genomic: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
EST: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATEST: gi|162229044|gb|FC404754.1|FC404754
genomic: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
EST: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAG GTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
genomic: TGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcc ... aaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATAT
agattgtggggtaaagacagaaattctgtttataacgaagttatgaaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATTTACTCGAAACTAAAGGTCGCGCTATCATTTGTGTAGCTGAGGGTGCCG
ttataac putative branch site (score: 6)
aaattctgtttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatcctgtatattttatatataataattcaaattttgcaactagattgtggggtaaagacagaaattctgtttataacgaagttatgaaacctgtagGTAAAATTTACTGTGGACGGACCAGAGGGAATGTTGCAGCACGTTCAATATTTACTCGAAACTAAAGGTCGCGCTATCATTTGTGTAGCTGAGGGTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA