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gtgaatgtcaatcctcttttgcatgctctgcgcatgagtttctcaatgtgggatttgtggaatttctcagctgaagttaacactgcatttttgcaacactttggtcggaagcctaaacctatcccttgtagttggatttatcaccagtctggtgagaaaagttctgaatttttgctgtgctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGTAAAATGTTTGTCCACGAAGACGACCGTGTACTTCTCAAG
species | Physcomitrella patens |
transcript | PP1S94_106V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAG TCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGEST: gi|162198100|gb|FC372127.1|FC372127
genomic: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAGgtgaatgtca ... ctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGG
EST: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAG TCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGEST: gi|162185160|gb|FC362294.1|FC362294
genomic: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAGgtgaatgtca ... ctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGG
EST: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAG TCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGEST: gi|100359456|gb|BY984263.1|BY984263
genomic: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAGgtgaatgtca ... ctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGG
EST: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAG TCTTCCCTTTGC-AGAAGGCCGGCAGGTGAEST: gi|67574419|gb|BJ947243.1|BJ947243
genomic: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAGgtgaatgtca ... ctggatgtagTCTTCCCTT-GCCAGAAGGCCGGCAGGTGA
EST: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAG TCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGG
genomic: GACGTATTCGATATTCCTGCTCGTCCTTCTACTTTTTGTGCTAAAACCAGgtgaatgtca ... ctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGG
gatttatcaccagtctggtgagaaaagttctgaatttttgctgtgctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGTAAAATGTTTGTCCACGAAGACGACCGTGTACTTCTCAAG
tgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgtcaatcctcttttgcatgctctgcgcatgagtttctcaatgtgggatttgtggaatttctcagctgaagttaacactgcatttttgcaacactttggtcggaagcctaaacctatcccttgtagttggatttatcaccagtctggtgagaaaagttctgaatttttgctgtgctggatgtagTCTTCCCTTGCCAGAAGGCCGGCAGGTGAACCGCTGGAGCACCAATCTTGGTAAAATGTTTGTCCACGAAGACGACCGTGTACTTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA