1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTTGGCTCGCATACCGATAGTATTCAGTGTGGCCATTATTTCGCCTCACGGATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctgtcttgagctgtagataaattgaacaagaatattctctatgggatttctgacgagggcacaaaaaaaggagatggaataattttgtttttctacttgaaaatttaaacaagttaaattaaggtattgaaacgaaaggtttgctaataaaacgaggtaatggggattggattgcaacag
species | Physcomitrella patens |
transcript | PP1S93_98V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAA GTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAGEST: gi|162256681|gb|FC433199.1|FC433199
genomic: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctg ... attgcaacagGTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
EST: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAA GTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAGEST: gi|162193018|gb|FC371962.1|FC371962
genomic: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctg ... attgcaacagGTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
EST: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAA GTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAGEST: gi|162259833|gb|FC435968.1|FC435968
genomic: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctg ... attgcaacagGTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
EST: CCGATACGGGAGGACAA GTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAGEST: gi|162256721|gb|FC433239.1|FC433239
genomic: CCGATACGGGAGGACAAgtaagttctg ... attgcaacagGTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
EST: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAA GTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
genomic: GATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctg ... attgcaacagGTTGTATATATATTGGACCAGGTTCGAGCAATGGAAAAAGAGATGCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGCTCGCATACCGATAGTATTCAGTGTGGCCATTATTTCGCCTCACGGATACTTCGGGCAGTCTAACGTTCTAGGAATGCCCGATACGGGAGGACAAgtaagttctgtcttgagctgtagataaattgaacaagaatattctctatgggatttctgacgagggcacaaaaaaaggagatggaataattttgtttttctacttgaaaatttaaacaagttaaattaaggtattgaaacgaaaggtttgctaataaaacgaggtaatggggattggattgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA