1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgtgaaaaaaccactagctttcaatgctccagtcaaattagaattatttttaacaatttttattggaatttggagaacttcagttcagccaagttagtatttctgacaagaagtgtattgtgtgggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATCTACTGGAAGAAGTTTGAAGAAAAATATCACTTTTCTTGCCAATTCACAG
species | Physcomitrella patens |
transcript | PP1S93_98V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAG TGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATCEST: gi|162193018|gb|FC371962.1|FC371962
genomic: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAGgtttgtgaaa ... gggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATC
EST: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAG TGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATCEST: gi|162259833|gb|FC435968.1|FC435968
genomic: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAGgtttgtgaaa ... gggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATC
EST: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAG TGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATC
genomic: ACGGCAATCTTGTAGCCTCTCTGCTATGCCATCAACTTGGTGTAACTCAGgtttgtgaaa ... gggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATC
ttcagttcagccaagttagtatttctgacaagaagtgtattgtgtgggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATCTACTGGAAGAAGTTTGAAGAAAAATATCACTTTTCTTGCCAATTCACAG
ttctgac putative branch site (score: 2)
ttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgaaaaaaccactagctttcaatgctccagtcaaattagaattatttttaacaatttttattggaatttggagaacttcagttcagccaagttagtatttctgacaagaagtgtattgtgtgggtatttagTGCAACATAGCACACGCGCTTGAGAAAACAAAGTACCCAGATTCAGACATCTACTGGAAGAAGTTTGAAGAAAAATATCACTTTTCTTGCCAATTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA