Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttctggaaactgctggctttgattgcctgcggggatagtattgtgcattttctggtgtgcgctgctgattgtgaaggaccctggaatgtggcgcagGATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTCATGCTTACACTTTACACGAGCCGATTGGCGTGGTCGGTTCAATTTTGCC

Basic information

species Physcomitrella patens
transcript PP1S93_81V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155544|gb|FC331001.1|FC331001
EST:     ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAN                         GATGGTGCGACAAGGCACAAGGGATGACGCTGCCNACAAATGGACCGTTTC
genomic: ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAGgtagttctgg ... tgtggcgcagGATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTC
EST: gi|100376854|gb|BY949497.1|BY949497
EST:     ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAG                         GATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTC
genomic: ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAGgtagttctgg ... tgtggcgcagGATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTC
EST: gi|162162109|gb|FC338900.1|FC338900
EST:     ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAG                         GATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTC
genomic: ACGACTGGGAGAAGCACCTCTTGCTATCGGGTTATTTCGGTACTATGCAGgtagttctgg ... tgtggcgcagGATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcattttctggtgtgcgctgctgattgtgaaggaccctggaatgtggcgcagGATGGTGCGACAAGGCACAAGGGATGACGCTGCCAACAAATGGACCGTTTCATGCTTACACTTTACACGAGCCGATTGGCGTGGTCGGTTCAATTTTGCC
                     tgctgat  putative branch site (score: 3)
     attttct  TA-rich tract