1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctcgggttgcagtctgatagtacttggtatttggtgctcttgctcagactcggatttgatcgcaacgtaagacacgtactcacttactgtcacttgtagGGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAGTTTTGGCAACTGAACAGGTGGAAGCTCCTATTAAATCACCGTTTCCAGT
species | Physcomitrella patens |
transcript | PP1S93_81V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCAAGACTGTAGTTCGTCGTCGGCCAACTTCAGTTCTTCTAGTACCA GGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAGEST: gi|162162109|gb|FC338900.1|FC338900
genomic: ACATCAAGACTGTAGTTCGTCGTCGGCCAACTTCAGTTCTTCTAGTACCAgtgagtcttt ... tcacttgtagGGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAG
EST: ACATCAAGACTGTAGTTCGTCGTCGGCCAACTTCAGTTCTTCTAGTACCA GGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAG
genomic: ACATCAAGACTGTAGTTCGTCGTCGGCCAACTTCAGTTCTTCTAGTACCAgtgagtcttt ... tcacttgtagGGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAG
cagactcggatttgatcgcaacgtaagacacgtactcacttactgtcacttgtagGGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAGTTTTGGCAACTGAACAGGTGGAAGCTCCTATTAAATCACCGTTTCCAGT
atttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcgggttgcagtctgatagtacttggtatttggtgctcttgctcagactcggatttgatcgcaacgtaagacacgtactcacttactgtcacttgtagGGCGCCGGAGCAGAAGCGGAGTTGGCCGAGTCAGCATGCATTGTCGGGCAGTTTTGGCAACTGAACAGGTGGAAGCTCCTATTAAATCACCGTTTCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG