1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTGGTTTGGCCTGGGGCATTTCTTGTGGTAGCAGCGGAGACGAGGTCGCCGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAGgtgcgttggtcttttcagaggtttgcgccagtgggttgaacttgatcgccgtcctgtgcttgaaatacagaatagtttttttcactctagaattcggttg...
species | Physcomitrella patens |
transcript | PP1S93_77V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGACATTGCCAG GTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGGEST: gi|162184482|gb|FC359956.1|FC359956
genomic: AGACATTGCCAGgtgcgttggt ... tgttgcgcagGTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGG
EST: CGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAG GTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGGEST: gi|162255357|gb|FC432083.1|FC432083
genomic: CGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAGgtgcgttggt ... tgttgcgcagGTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGG
EST: CGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAG GTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGG
genomic: CGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAGgtgcgttggt ... tgttgcgcagGTCATAAGAGAATTATTCCCACTTGGAGGATGTTCTGGAACTTAATAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGTTTGGCCTGGGGCATTTCTTGTGGTAGCAGCGGAGACGAGGTCGCCGTATCAAGAAAGGTGGCGAAGAATATTTTTTCGTTTTAGACATTGCCAGgtgcgttggtcttttcagaggtttgcgccagtgggttgaacttgatcgccgtcctgtgcttgaaatacagaatagtttttttcactctagaattcggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA