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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGATTTGAGAGTGCAGACTTCAAATTGAGTCATGAGATGACTCAACTTTTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAGgtattctgctactcatcttttttcccttcgttgtagatatcatatggtaattttttaaatatctttcttgaccttctctattctctagactttcaaattgtcgtgagacctgtactggatggtacacattttctttttcattctgagataaagttgagtacttacctattaagcaatacttgcttggcag

Basic information

species Physcomitrella patens
transcript PP1S93_76V6.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S93_76V6.1 (Physcomitrella patens), 5'ss of exon 25
lower sequence: Vv03s0063g02260.t01 (Vitis vinifera), 5'ss of exon 25
TGCGATTTGAGAGTGCAGACTTCAAATTGAGTCATGAGATGACTCAACTTTTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAGgtattctgctactcatcttttttcccttcgttgtagatatcatatggtaattttttaaatatctttcttgaccttctctattctctagactttcaaattgtcgtgagacctgtactggatggtacacattttctttttcattctgagataaagttgagtacttacctattaagcaatacttgcttggcag
|||||||||| |||||  |||||||  |||| ||||||||||||||| |  | ||||| ||||| || |||||||| || |||||| |  | || || |||||                               ||| || ||   |     |  ||  ||| |||| ||  | |  || |||| |    | |||||||    ||| | || | |||  |   | | ||  |||                                                        
TGCGATTTGAAAGTGCCCACTTCAAGCTGAGCCATGAGATGACTCAATTACTTGATCCATCTGGGGTTATGAAAAGTGAAACCTGGTACAAGTTTGTAAGgta-----------------------------agagaaatgatgctgc----tcctagttatttttcatgttccttccttttctgttccatatcaaatt----tgaaagctctcctgtgtatcatatatgatctcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698973|gb|BJ959206.1|BJ959206
EST:     TTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAG                         CTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTT
genomic: TTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAGgtattctgct ... tgcttggcagCTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTT