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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctgctactcatcttttttcccttcgttgtagatatcatatggtaattttttaaatatctttcttgaccttctctattctctagactttcaaattgtcgtgagacctgtactggatggtacacattttctttttcattctgagataaagttgagtacttacctattaagcaatacttgcttggcagCTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTTGAACACTGTCAATTTGATGATTGACAGCGGTCTTCCATGTTTCAGTCGA

Basic information

species Physcomitrella patens
transcript PP1S93_76V6.1
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698973|gb|BJ959206.1|BJ959206
EST:     TTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAG                         CTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTT
genomic: TTAGATCCCTCTGGAGTGATGAAAAGCGACACCTGGAATTACTTCGTCAGgtattctgct ... tgcttggcagCTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattctgagataaagttgagtacttacctattaagcaatacttgcttggcagCTTGTGTGTGAAGGGTTATCTGGCGGCAAGACTCCACATGGACGGGATCTTGAACACTGTCAATTTGATGATTGACAGCGGTCTTCCATGTTTCAGTCGA
                       tacttac  putative branch site (score: 1)
                                           cttgctt  putative PPT
            ataaagtt  TA-rich tract