1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtcattccatagtggagagtttcggttgatgtatttattgctgttcttttcgttccgttattgtaggctctatcaatttgtaaattcagccaaacaacgcttaacttgtgtttttattcgtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGAATGGTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGAC
species | Physcomitrella patens |
transcript | PP1S93_73V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|162187793|gb|FC364172.1|FC364172
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: CTGTGACACGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|100356155|gb|BY946224.1|BY946224
genomic: CTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|161982347|gb|EE296254.1|EE296254
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|162162646|gb|FC338948.1|FC338948
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|162180470|gb|FC356112.1|FC356112
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGEST: gi|162164608|gb|FC341903.1|FC341903
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: CGCAAGGGATACTGGCAG TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: CGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
aatttgtaaattcagccaaacaacgcttaacttgtgtttttattcgtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGAATGGTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGAC
gcttaac putative branch site (score: 65)
ttcgttt putative PPT
tgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcattccatagtggagagtttcggttgatgtatttattgctgttcttttcgttccgttattgtaggctctatcaatttgtaaattcagccaaacaacgcttaacttgtgtttttattcgtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGAATGGTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA