1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacacatttagtccctcgaaagtattttgtgggttcaagggattcaaaaaattcattacattctgtctacttttggttcttgttgaattagtacaagccacttcatgtacgagtttacgtggttgatttttcacttgggtcttacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGAGGACTCCACTGGAGATCAAGTTCAAACGCCAGCAAAATCTTTTTTCAA
species | Physcomitrella patens |
transcript | PP1S93_67V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|37836462|gb|BJ594470.1|BJ594470
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|208366273|gb|DC947531.1|DC947531
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|208387152|gb|DC945451.1|DC945451
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|18336673|gb|BJ168696.1|BJ168696
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|208398893|gb|DC920841.1|DC920841
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGEST: gi|208373033|gb|DC948798.1|DC948798
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
EST: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAG CCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
genomic: GATTAAGGAGGACCAAGCCAACACCCTTGTTACAGAAGAACAGCGTAAAGgtacacattt ... tacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCG
ccacttcatgtacgagtttacgtggttgatttttcacttgggtcttacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGAGGACTCCACTGGAGATCAAGTTCAAACGCCAGCAAAATCTTTTTTCAA
gtcttac putative branch site (score: 11)
tcttacct CT-rich tract
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacatttagtccctcgaaagtattttgtgggttcaagggattcaaaaaattcattacattctgtctacttttggttcttgttgaattagtacaagccacttcatgtacgagtttacgtggttgatttttcacttgggtcttacctggcagCCTCTGAGGCTGCTGCTTGGGGAGGCTCTCGTCCTGTGAAGCCCGCGGCCGAGGACTCCACTGGAGATCAAGTTCAAACGCCAGCAAAATCTTTTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA