1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggctgcagatggttgttagcaaagatataaggaaatgttgacagttctcatctgcgtcatgttaaagttcttcatctgagaagcttggttggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATGAGATGCGGAATCCCTCTTCTTATGATTATCCACCTACTTCAACTCCAT
species | Physcomitrella patens |
transcript | PP1S93_67V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|37836462|gb|BJ594470.1|BJ594470
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: TTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208359165|gb|DC934668.1|DC934668
genomic: TTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208364545|gb|DC930935.1|DC930935
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208366273|gb|DC947531.1|DC947531
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|100387906|gb|BY970651.1|BY970651
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208387152|gb|DC945451.1|DC945451
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|18336673|gb|BJ168696.1|BJ168696
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208398893|gb|DC920841.1|DC920841
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|208373033|gb|DC948798.1|DC948798
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATEST: gi|100426838|gb|BY977388.1|BY977388
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
tctcatctgcgtcatgttaaagttcttcatctgagaagcttggttggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATGAGATGCGGAATCCCTCTTCTTATGATTATCCACCTACTTCAACTCCAT
atgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctgcagatggttgttagcaaagatataaggaaatgttgacagttctcatctgcgtcatgttaaagttcttcatctgagaagcttggttggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGATGAGATGCGGAATCCCTCTTCTTATGATTATCCACCTACTTCAACTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
ggctgca