1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCGCACGAGAAATCGAATTCTTTGAGCAGATCAGCAGGACTCTTTCTCTGTCTCTACTACGTCGCAACCAGgtgcttcgcattacactccatttgtcgtagttggctaccaaagaatcaatttgcagggtgtttgcgaagcacgataatgagctacaaagttcagttagag...
species | Physcomitrella patens |
transcript | PP1S93_57V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCAGATCAGCAGGACTCTTTCTCTGTCTCTACTACGTCGCAACCAG GTGAATTTGGTAATGGATCAGCGGCAACAAATCACTGAAATATCACTAAAAEST: gi|162189771|gb|FC365305.1|FC365305
genomic: TTGAGCAGATCAGCAGGACTCTTTCTCTGTCTCTACTACGTCGCAACCAGgtgcttcgca ... ggcattgtagGTGAATTTGGTAATGGATCAGCGGCAACAAATCACTGAAATATCACTAAAA
EST: TGAGCAGATCAGCAGGACTCGTTTCTCTGTCTCTACTACGTCGCAACCAG GTGAATTTGGTAATGGATCAGCGGCAACAAATCACTGAAATATCACTAAAA
genomic: TGAGCAGATCAGCAGGACTC-TTTCTCTGTCTCTACTACGTCGCAACCAGgtgcttcgca ... ggcattgtagGTGAATTTGGTAATGGATCAGCGGCAACAAATCACTGAAATATCACTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGCACGAGAAATCGAATTCTTTGAGCAGATCAGCAGGACTCTTTCTCTGTCTCTACTACGTCGCAACCAGgtgcttcgcattacactccatttgtcgtagttggctaccaaagaatcaatttgcagggtgtttgcgaagcacgataatgagctacaaagttcagttagag
- - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - AGATCA