1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caatgttcttattttattttatgtatatatttatttattggatttattttatttttatcagtattattattaataatattgtcggctgggatgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTGACGGAGTCCATGATAAAGCGAGATGCTGGTGTTAAGGACTCGGGGAAA
species | Physcomitrella patens |
transcript | PP1S93_52V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTEST: gi|37821610|gb|BJ579676.1|BJ579676
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTEST: gi|162189407|gb|FC366565.1|FC366565
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTEST: gi|162189408|gb|FC366566.1|FC366566
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTEST: gi|18336268|gb|BJ168290.1|BJ168290
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTEST: gi|16137533|gb|BI894397.1|BI894397
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGGTTTTTCTGGGGTCCCTGTTCGGTGACTEST: gi|37844818|gb|BJ602826.1|BJ602826
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTG-TTTTTCTGGGGTCCCTGTTCGGTGACT
EST: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
attttatttttatcagtattattattaataatattgtcggctgggatgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTGACGGAGTCCATGATAAAGCGAGATGCTGGTGTTAAGGACTCGGGGAAA
tattaat putative branch site (score: 2)
atttttatcagtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgttcttattttattttatgtatatatttatttattggatttattttatttttatcagtattattattaataatattgtcggctgggatgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTTGACGGAGTCCATGATAAAGCGAGATGCTGGTGTTAAGGACTCGGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG