1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggatacttgcaacccctaatcttaaagtcccaacggtgacttatttctaaattcagtagcctcatgtacgtgtctgacgcttttttgtttcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGATATTCCCAACGCCCTAGCTGGAAGTATTAATTAAAACAGAAAAATTCGAA
species | Physcomitrella patens |
transcript | PP1S93_52V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCCCTTCACCTTCACCTTCACACCTAGCTCCTCGTGCTCCCGTTCAAG CAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGATEST: gi|162177737|gb|FC354571.1|FC354571
genomic: CTCCCCTTCACCTTCACCTTCACACCTAGCTCCTCGTGCTCCCGTTCAAGgtaaggtgtg ... tcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGAT
EST: CCTCGTGCTCCCGTTCAAG CAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGATEST: gi|18342000|gb|BJ174035.1|BJ174035
genomic: CCTCGTGCTCCCGTTCAAGgtaaggtgtg ... tcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGAT
EST: CTCCCCTTCACCTTCACCTTCACACCTAGCTCCTCGTGCTCCCGTTC-A- -AGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGAT
genomic: CTCCCCTTCACCTTCACCTTCACACCTAGCTCCTCGTGCTCCCGTTCAAGgtaaggtgtg ... tcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGAT
ttctaaattcagtagcctcatgtacgtgtctgacgcttttttgtttcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGATATTCCCAACGCCCTAGCTGGAAGTATTAATTAAAACAGAAAAATTCGAA
cttttttgtttcactt CT-rich tract
ttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatacttgcaacccctaatcttaaagtcccaacggtgacttatttctaaattcagtagcctcatgtacgtgtctgacgcttttttgtttcacttgcagCAGCTGAATTGCGATGCTAAGCAGCCGTTAAAGGCGTAAATATTGTTCGATATTCCCAACGCCCTAGCTGGAAGTATTAATTAAAACAGAAAAATTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG