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gtatgtattaaaaaactaccaacaccacatttttctgtttgatttcagaaatttgtcagttgaggtcccatgcctttgtgacccaaatgcacgtgaagtatctagcatgcgaacattgacaacaattcatgaatgtcaatagtaacagtaccaaagttttcgcaaattgtttcactattcttgcattgtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCATGAAACCGTACGTTTTATTTGGAGCCGGAGCAAGTGAG
species | Physcomitrella patens |
transcript | PP1S93_48V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCNAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162250870|gb|FC426914.1|FC426914
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: TGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162157103|gb|FC333673.1|FC333673
genomic: TGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162186249|gb|FC362181.1|FC362181
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162158928|gb|FC334801.1|FC334801
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162191113|gb|FC367375.1|FC367375
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162193300|gb|FC370918.1|FC370918
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162199013|gb|FC375783.1|FC375783
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGEST: gi|162166947|gb|FC343332.1|FC343332
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTG
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|162152767|gb|FC329773.1|FC329773
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCEST: gi|100430081|gb|BY978237.1|BY978237
genomic: CTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
EST: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATG GCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
genomic: CCAAGGATAAAACTGATGGGGAAGTTTCGTGGGAGTACCTTTGTACGATGgtatgtatta ... gtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCC
taacagtaccaaagttttcgcaaattgtttcactattcttgcattgtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCATGAAACCGTACGTTTTATTTGGAGCCGGAGCAAGTGAG
tagtaac putative branch site (score: 20)
aaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattaaaaaactaccaacaccacatttttctgtttgatttcagaaatttgtcagttgaggtcccatgcctttgtgacccaaatgcacgtgaagtatctagcatgcgaacattgacaacaattcatgaatgtcaatagtaacagtaccaaagttttcgcaaattgtttcactattcttgcattgtatgtgcagGCCAAATTGATGCAAATTGATTTGCAGTCTCATGAGCGTTGGGTTTCTCCCATGAAACCGTACGTTTTATTTGGAGCCGGAGCAAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG