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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaattactgttttattgttttacaatttctggatgtcttcttcactaaagaattgtgaagcaagtgacactctaacttgatgtgtaacacgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTCGCAATGCCATCAGAGCTGCGAGGAAAGACCATCTCGGCAGTAACGCAGA

Basic information

species Physcomitrella patens
transcript PP1S93_48V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18339569|gb|BJ171596.1|BJ171596
EST:     GGAGCTCTNCAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37839525|gb|BJ597533.1|BJ597533
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|18341335|gb|BJ173370.1|BJ173370
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|18336428|gb|BJ168450.1|BJ168450
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162250870|gb|FC426914.1|FC426914
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|7583928|gb|AW699829.1|AW699829
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162190070|gb|FC366644.1|FC366644
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162166600|gb|FC343492.1|FC343492
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162186248|gb|FC362180.1|FC362180
EST:     GGAGCTTTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162186773|gb|FC362809.1|FC362809
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162191399|gb|FC367142.1|FC367142
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162166601|gb|FC343493.1|FC343493
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162199012|gb|FC375782.1|FC375782
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37850055|gb|BJ608063.1|BJ608063
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37848061|gb|BJ606069.1|BJ606069
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37851376|gb|BJ609384.1|BJ609384
EST:     GAGCTCTACAACAGCCCCGGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GAGCTCTACAACAGCCCC-GAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162194329|gb|FC368512.1|FC368512
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162155923|gb|FC332472.1|FC332472
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162158927|gb|FC334800.1|FC334800
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162151232|gb|FC327192.1|FC327192
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162169601|gb|FC345541.1|FC345541
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|18337119|gb|BJ169143.1|BJ169143
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162274135|gb|FC450207.1|FC450207
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37844012|gb|BJ602020.1|BJ602020
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|19781537|gb|BQ039733.1|BQ039733
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162221572|gb|FC397589.1|FC397589
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162152766|gb|FC329772.1|FC329772
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162236082|gb|FC411097.1|FC411097
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162174885|gb|FC351677.1|FC351677
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162191113|gb|FC367375.1|FC367375
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162250869|gb|FC426913.1|FC426913
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162193300|gb|FC370918.1|FC370918
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTNGT-AGTAGGCTCTGTGTACTCTGCG
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGT-GTTAGTAGGCTCTGTGTACTCTGCG
EST: gi|162161194|gb|FC337257.1|FC337257
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162231672|gb|FC407641.1|FC407641
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37842953|gb|BJ600961.1|BJ600961
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162193299|gb|FC370917.1|FC370917
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162236083|gb|FC411098.1|FC411098
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162152767|gb|FC329773.1|FC329773
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162257124|gb|FC432584.1|FC432584
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37845406|gb|BJ603414.1|BJ603414
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162223513|gb|FC399143.1|FC399143
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162154017|gb|FC330252.1|FC330252
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|37838554|gb|BJ596562.1|BJ596562
EST:     GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
EST: gi|162157102|gb|FC333672.1|FC333672
EST:     GGAGCTTTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAG                         CGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC
genomic: GGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 22 (downstream exon)
Score: 18

TGGACATACAAGCCACCTACTATGGACACAATTCCACAGAAGTTCAATGTGGAGCTCTACAACAGCCCCGAGCACAAAGACCGTATCTTATCTTCAAAAGgttcagctcc ... cgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTCGCAATGCCATCAGAGCTGCGAGGAAAGACCATCTCGGCAGTAACGCAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaattactgttttattgttttacaatttctggatgtcttcttcactaaagaattgtgaagcaagtgacactctaacttgatgtgtaacacgtgtaacagCGGTTGGTGAGCCTCCTCTAGTGTTAGTAGGCTCTGTGTACTCTGCGATTCGCAATGCCATCAGAGCTGCGAGGAAAGACCATCTCGGCAGTAACGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC