1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gattctctaagtttcgtttcccgagtactctgatgttactgctatggatggggtcgtagcaacacatgggatttcaactagttcacatgcaatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTATTCAG
species | Physcomitrella patens |
transcript | PP1S93_26V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAG GGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTEST: gi|162172333|gb|FC348274.1|FC348274
genomic: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAGgtaaagtttt ... aatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
EST: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAG GGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTEST: gi|67700145|gb|BJ960378.1|BJ960378
genomic: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAGgtaaagtttt ... aatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
EST: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAG GGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTEST: gi|162214144|gb|FC389982.1|FC389982
genomic: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAGgtaaagtttt ... aatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
EST: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAG GGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTEST: gi|208364749|gb|DC943623.1|DC943623
genomic: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAGgtaaagtttt ... aatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
EST: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAG GGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
genomic: ACAACTTAATCAGTTCCTATCCTGATGATTTCAGGGGATACTTGGCCAAGgtaaagtttt ... aatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTT
ggatggggtcgtagcaacacatgggatttcaactagttcacatgcaatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTATTCAG
atttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattctctaagtttcgtttcccgagtactctgatgttactgctatggatggggtcgtagcaacacatgggatttcaactagttcacatgcaatgttacagGGTATATTACTGAAGGATCAAGGGAAGGATAGCGATGCAGAGCGCATGTTTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc