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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTCCAAAAGACACCATAGGCTTGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtctttttcaaaaaagtttctatcactgaatcgtcgttgatggacattggattaagtcagaaaccactggatcgaaaaaatagatttcaattgaaattccgcctagagatgtagcaacacagttatggactctcatctattggatatattacgtgatcag

Basic information

species Physcomitrella patens
transcript PP1S93_26V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172333|gb|FC348274.1|FC348274
EST:     TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAG                         GCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
genomic: TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtcttt ... acgtgatcagGCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
EST: gi|67700145|gb|BJ960378.1|BJ960378
EST:     TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAG                         GCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
genomic: TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtcttt ... acgtgatcagGCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
EST: gi|162214145|gb|FC389983.1|FC389983
EST:     TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAG                         GCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
genomic: TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtcttt ... acgtgatcagGCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
EST: gi|162214144|gb|FC389982.1|FC389982
EST:     TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAG                         GCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
genomic: TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtcttt ... acgtgatcagGCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
EST: gi|208364749|gb|DC943623.1|DC943623
EST:     TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAG                         GCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA
genomic: TGTTGCAAGGACTTGTCAGTGCCCTGCTAGCAGACAACAAGCCGAGTGAGgtatgtcttt ... acgtgatcagGCTGTTGGAGAGATGCTTGCAGCAAGAACTCGACTGAATGCAGGTCCTCAA