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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAGgtatttgtagactttgactcgtgatgtcgaaacttgggtgtcttaatggcatctactcttggtagaaattcccttgtgtcaatctataatgccatgatca...

Basic information

species Physcomitrella patens
transcript PP1S93_182V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 8
GTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAGgtatttgtagactttgactcgtgatgtcgaaacttgggtgtcttaatggcatctactcttggtagaaattcccttgtgt-caatctataatgccatgatca---
 || || ||||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||| ||| | ||||| ||||||||  |    | |  | | | |  |  |   ||     |   ||||   | || ||||| ||   ||    || | |  || | |   |    |||      
TTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAGgtattgatct-ttctatcccttaaaataaattattaaagcttcaaatg---tgtagtcttgctaatcatattattatttgtaaacaagtttttgctgactcttg

upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ17984 (Selaginella moellendorffii), 5'ss of exon 8
GTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAGgtat--ttgtagactttga-ctcgtgatg----tcgaaacttgggtgtcttaatggcatctactcttggtagaaattcccttgtgtcaatctataatgccatgatca
||| || || || ||||| ||||||||||| || |||||||||||||| ||||| || ||  | |  || |||||||| ||| | || || ||||| |  | || | | |||  || ||| |     || | ||| || | | ||     |     ||||  |                                      
GTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAGgtttgctggttggcattgttcttgtgtttgtcttcaacactgggatttttt-----ccctctctctcag--------------------------------------

upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ37113 (Selaginella moellendorffii), 5'ss of exon 8
GTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAGgtatttgtagactttgactcgtgatgtcgaaacttgggtgtcttaatggcatctactcttggtagaaattcccttgtgtcaatctataatgccatgatca
||| || || || ||||| ||||||||||| || |||||||||||||| ||||| || ||  | |  || |||||||| ||| | || || ||||  ||||       ||  | |   |||    ||||| ||       || | || || || || |    | ||  | |  ||                   
GTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAGg--tttgc------tggttggcattgt----acttgtgt------ttgtcttcaacactgggaatttttccctctctcacag------------------