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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggtttactttaaataacattatggtcccaacatgcatggttgtgtgtttgagccttgtttgaacttggagtgttaattgtctcatgcaagtaccgctagcaattgaaactgagaattgtacagctattgtcacagaatacacttctgacatggacacttcacacagGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG

Basic information

species Physcomitrella patens
transcript PP1S93_182V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
gtatgggtttactttaaataacattatggtcccaacatgcatggttgtgtgtttgagccttgtttgaacttggagtgttaattgtct-catgcaagtaccgctagcaattgaaactgagaattgtacagctattgtcacagaatacacttctgacatggacacttcacacagGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG
                       | ||   |   |  | |||  |  | |  || |   || ||| |   |    | |   || | | | |     |    ||  |  ||   |    |||||    |   ||| | | | || | | || ||            |  | || || || ||||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||| ||| | ||||| |||
----------------------gtaatatgcttgagctacatattcttat--ttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgtta--cattctgataaaagaaatttatg------------cttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG

upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ37113 (Selaginella moellendorffii), 3'ss of exon 7
gtatgggtttactttaaataacattatggtcccaacatgcatggttgtgtgtttgagccttgtttgaacttggagtgttaattgtctcatgcaagtaccgctagcaattgaaactgagaattgtacagct-attgtcacagaatacacttctgacatgga--cacttcacac---agGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG
                                                                                                                  | ||  |  || || |  | |||||    | |  || |||| | |   ||||| |      ||||| || || || ||||| ||||||||||| || |||||||||||||| ||||| || ||  | |  || |||||||| ||| | || || |||
-----------------------------------------------------------------------------------------------------------------gtaagcgtgttatagtttgtcgtcacgt--ttctgttttgacttcgtgtcactttatcttgaagGTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAG

upper sequence: PP1S93_182V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ17984 (Selaginella moellendorffii), 3'ss of exon 7
gtatgggtttactttaaataacattatggtcccaacatgcatggttgtgtgtttgagccttgtttgaacttggagtgttaattgtctcatgcaagtaccgctagcaattgaaactgagaattgtacagctattgtcacagaatacacttctgacatgga--cacttcacac---agGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG
                                                                                                                  | ||  |  ||  | |  ||||  |   | |  || |||| | |   || || |      ||||| || || || ||||| ||||||||||| || |||||||||||||| ||||| || ||  | |  || |||||||| ||| | || || |||
-----------------------------------------------------------------------------------------------------------------gtaagcgtgttatggtt--tgtcgtacgtttctgttttgacttcgtgtcattttatcttgaagGTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaattgtacagctattgtcacagaatacacttctgacatggacacttcacacagGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG
                               ttctgac  putative branch site (score: 2)