1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTCAGGCGAGGCTCGGAGGTGGTGGTGGTGGTGCCGGTGTGTTGGAGCGACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttaccttggattaacctggagattgattgagtcatctgttgtggatctattcacttggcctgcctggactggttcgtggcagtgattgccaagca...
species | Physcomitrella patens |
transcript | PP1S93_152V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|162267754|gb|FC443744.1|FC443744
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|162267753|gb|FC443743.1|FC443743
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGTTCCGACACGACTCCCAGGATTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|67693921|gb|BJ954154.1|BJ954154
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|162212441|gb|FC388689.1|FC388689
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|162261543|gb|FC437560.1|FC437560
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|208373724|gb|DC952701.1|DC952701
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|208353236|gb|DC926161.1|DC926161
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|208360198|gb|DC950199.1|DC950199
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGCEST: gi|208369687|gb|DC936393.1|DC936393
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCANCGGAACCGAACAGGTGGCGGCGAGCEST: gi|162261542|gb|FC437559.1|FC437559
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
EST: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAG GAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
genomic: ACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttacc ... cggtttgcagGAGGGGAGAGTGGTAGAGCAGCGCAGCGGAACCGAACAGGTGGCGGCGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCAGGCGAGGCTCGGAGGTGGTGGTGGTGGTGCCGGTGTGTTGGAGCGACCGAAGCTGGACCAGAGCGGCTCCGACACGACTCCCAGGACTGAAGAAGgtgtgttaccttggattaacctggagattgattgagtcatctgttgtggatctattcacttggcctgcctggactggttcgtggcagtgattgccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG