1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgtgtgatcttgctgttgagatccatgcgttgtttggtgtcaaggtctttttctttagaggctaacaccatcacatgtgacaaaattggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTGTCTTGGCTGGTATCGAATCCGGGCATCTGGGTGGACTAGCCATTGATG
species | Physcomitrella patens |
transcript | PP1S93_138V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAG GGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTEST: gi|162228914|gb|FC404200.1|FC404200
genomic: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAGgtacgtatta ... ggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCT
EST: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAG GGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTEST: gi|37847792|gb|BJ605800.1|BJ605800
genomic: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAGgtacgtatta ... ggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCT
EST: TAAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAG GGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTEST: gi|162228915|gb|FC404201.1|FC404201
genomic: TAAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAGgtacgtatta ... ggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCT
EST: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAG GGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCT
genomic: AAAGGGATAATTGATGCAACGTTTCTTTCAGCGATGAAGAAGgtacgtatta ... ggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCT
aggtctttttctttagaggctaacaccatcacatgtgacaaaattggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTGTCTTGGCTGGTATCGAATCCGGGCATCTGGGTGGACTAGCCATTGATG
ggctaac putative branch site (score: 10)
tttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtgtgatcttgctgttgagatccatgcgttgtttggtgtcaaggtctttttctttagaggctaacaccatcacatgtgacaaaattggcattgcagGGAGCTTACGTAGTAAACATCGCACGAGGAGGCTTGCTTGATTACGATGCTGTCTTGGCTGGTATCGAATCCGGGCATCTGGGTGGACTAGCCATTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgt