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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaattcagcttatggacagacatggtacacagagcggagcctttgcttgtgtatgtgtatacgtataatttcatgaaattgacccgggaattgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGCAGCACCTTGTACGGAAAAACT

Basic information

species Physcomitrella patens
transcript PP1S93_138V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100442054|gb|BY962947.1|BY962947
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGNTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|162228914|gb|FC404200.1|FC404200
EST:     GTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: GTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|100391012|gb|BY953022.1|BY953022
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|100447037|gb|CJ971336.1|CJ971336
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|18372772|gb|BJ204374.1|BJ204374
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTC
EST: gi|162228915|gb|FC404201.1|FC404201
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|208371164|gb|DC931596.1|DC931596
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|100379739|gb|BY949920.1|BY949920
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
EST: gi|100411709|gb|BY992302.1|BY992302
EST:     CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAG                         AGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC
genomic: CTTGCGCCGAACATTGTATTTACATGATGCTAGGCCTCTTGCGGCACCAGgtataagcat ... attgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgtgtatgtgtatacgtataatttcatgaaattgacccgggaattgtggcagAGAGTCATGGCGTCCTCTATTGCTGCAAAACGGTTAGGCGAACCTGCCGGCAGCACCTTGTACGGAAAAACT
                                aattgac  putative branch site (score: 3)
                   tataatttcatgaaat  TA-rich tract