Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67507727|gb|BJ940606.1|BJ940606EST: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAG GTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
genomic: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAGgtaattttca ... ctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
EST:
gi|162262808|gb|FC438746.1|FC438746EST: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAG GTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACAAT
genomic: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAGgtaattttca ... ctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
EST:
gi|100355693|gb|BY946063.1|BY946063EST: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAG GTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
genomic: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAGgtaattttca ... ctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
EST:
gi|208400730|gb|DC904908.1|DC904908EST: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAG GTTGCTGTCTTAACATTANGAATATGCGTGAATTGCTGTGATTTGANCGAT
genomic: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAGgtaattttca ... ctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
EST:
gi|162262809|gb|FC438747.1|FC438747EST: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAG GTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACAAT
genomic: CTCTTCTCAGGGTGTTGGGTGCCGTTGCGTTCTGCACTGGCTGTGTTCAGgtaattttca ... ctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttaagcttctctacggcattggaattaatcaagactttgtgggctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGATTACTACGAAGACATTGAGATGACCCGATCAATGAACGCCAAGGAGGCCA
aattaat putative branch site (score: 3)
aattaatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actaatgagtttctgtgatcaattcagatttctttattgactttaacttaagcttctctacggcattggaattaatcaagactttgtgggctgtatgtagGTTGCTGTCTTAACATTAGGAATATGCGTGAATTGCTGTGATTTGAACGATTACTACGAAGACATTGAGATGACCCGATCAATGAACGCCAAGGAGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG