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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaatatgcacagatactaaggcaaatgtttgggcataatatgatctgcgtttgtaacatgagatccagtttataacgaatatttcatttgtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCACATTGCAGTCTGCTCTACAACACTTCTCTTGATTCTTAATCTAATTGTT

Basic information

species Physcomitrella patens
transcript PP1S92_76V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100364751|gb|BY947890.1|BY947890
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|208353868|gb|DC906556.1|DC906556
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|67576938|gb|BJ949762.1|BJ949762
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|67507727|gb|BJ940606.1|BJ940606
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100419143|gb|BY975866.1|BY975866
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100355693|gb|BY946063.1|BY946063
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|208400730|gb|DC904908.1|DC904908
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100417287|gb|BY957259.1|BY957259
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100445601|gb|CJ975750.1|CJ975750
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100364550|gb|BY984659.1|BY984659
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|100387923|gb|BY970668.1|BY970668
EST:     CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: gi|162262809|gb|FC438747.1|FC438747
EST:     GCGCAAAATTTTGATCTACGGCGTTGTGAAG                         GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: GCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcgtttgtaacatgagatccagtttataacgaatatttcatttgtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCACATTGCAGTCTGCTCTACAACACTTCTCTTGATTCTTAATCTAATTGTT
                         ttataac  putative branch site (score: 2)
                        tttataacgaatattt  TA-rich tract