Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37850535|gb|BJ608543.1|BJ608543EST: TCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
genomic: TCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
EST:
gi|67692898|gb|BJ953131.1|BJ953131EST: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
genomic: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
EST:
gi|162279546|gb|FC455324.1|FC455324EST: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
genomic: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctcttcgtctactgccgcagcattctcttacgtgcaatttcaaccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTGGATCCAATATTAGCATACACTGCAGGAGCTGAAATCAATCAGTTGCAAT
ctcttac putative branch site (score: 3)
aatttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactttattgaagtcaaccaaccgttgatttttcttctacgtgacgcaaataagattgggatgtatgctcatctttggaattcttttctatccatctgctcttcgtctactgccgcagcattctcttacgtgcaatttcaaccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTGGATCCAATATTAGCATACACTGCAGGAGCTGAAATCAATCAGTTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA