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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatccgagatctgttgttcccctggttgtgtcaatatttgtggtggaatcaaatattcaatcgcaattggtatctctttgatcaatgtcttggggaacagATCCATGATGACAAGGTGGAATCTAAAAGTCTACTCAACAACAACAAGTATAGTGAATATTGTGCCCCTCTGACTTCGTTTGATTGGAACGAGGCTGAGC

Basic information

species Physcomitrella patens
transcript PP1S92_5V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279547|gb|FC455325.1|FC455325
EST:     AAAAACCCGACTTGCTGGCTACCACGGGCGACTATCTTCGCATATGGCAG                         ATCCATGATGACAAGGTGGAATCTAAAAGTCTACTCAACAACAACAAGTAT
genomic: AAAAACCCGACTTGCTGGCTACCACGGGCGACTATCTTCGCATATGGCAGgtgtgttgtc ... tggggaacagATCCATGATGACAAGGTGGAATCTAAAAGTCTACTCAACAACAACAAGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcaaatattcaatcgcaattggtatctctttgatcaatgtcttggggaacagATCCATGATGACAAGGTGGAATCTAAAAGTCTACTCAACAACAACAAGTATAGTGAATATTGTGCCCCTCTGACTTCGTTTGATTGGAACGAGGCTGAGC
                              ctttgat  putative branch site (score: 5)
     aaatattcaat  TA-rich tract