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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTTGTTGACATTTTCCTAGCTGCCTGCGTTGTCACCTCTGTTCCTGCTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcgctccggacttttctttccttagtcaactcaagtttgccggagtttagggttggttcatttcattcacctgcgagagctagtgctgagggc...

Basic information

species Physcomitrella patens
transcript PP1S92_5V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391814|gb|DC937990.1|DC937990
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|67569631|gb|BJ942455.1|BJ942455
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|18369231|gb|BJ201316.1|BJ201316
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|100396667|gb|BY990239.1|BY990239
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|18353461|gb|BJ185516.1|BJ185516
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|208348375|gb|DC905561.1|DC905561
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|67572682|gb|BJ945506.1|BJ945506
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|100406333|gb|BY955575.1|BY955575
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGGTTGTTGACATTTTCCTAGCTGCCTGCGTTGTCACCTCTGTTCCTGCTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcgctccggacttttctttccttagtcaactcaagtttgccggagtttagggttggttcatttcattcacctgcgagagctagtgctgagggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA