1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgttggttgaaacgttacatgctcttttgttgctgtctaagattatccatcagcataccatcactctgtataaactgcctaattattgataacatttagtgaagctcacggctgccagataattaagaattcgttgtctctgggattctaagtccagagtgtccacttttgttcgatctcttggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCGGAGATGATGCCGAGACTGAAGCTGTCACCGAGCCAGTTCCTGGGGCTT
species | Physcomitrella patens |
transcript | PP1S92_47V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7287204|gb|AW599691.1|AW599691
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCAGTGCCAACATCGAGAGGCCTGTCEST: gi|37826625|gb|BJ584637.1|BJ584637
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|37844503|gb|BJ602511.1|BJ602511
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|37847269|gb|BJ605277.1|BJ605277
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7583603|gb|AW699512.1|AW699512
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCCGTGCCAAGATCGAGAGGCCTGTCEST: gi|162261198|gb|FC437215.1|FC437215
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7583619|gb|AW699527.1|AW699527
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: GTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|37851788|gb|BJ609796.1|BJ609796
genomic: GTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7584076|gb|AW699974.1|AW699974
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|15261274|gb|BI436584.1|BI436584
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|162216969|gb|FC393087.1|FC393087
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|15261183|gb|BI436493.1|BI436493
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7148134|gb|AW510056.1|AW510056
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7584091|gb|AW699989.1|AW699989
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|22491668|gb|BU051591.1|BU051591
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|15326916|gb|BI487299.1|BI487299
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|208360419|gb|DC950032.1|DC950032
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|67694711|gb|BJ954944.1|BJ954944
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|162216968|gb|FC393086.1|FC393086
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|37826206|gb|BJ584218.1|BJ584218
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|162217884|gb|FC393880.1|FC393880
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7584167|gb|AW700065.1|AW700065
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCEST: gi|7583183|gb|AW699347.1|AW699347
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
EST: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAG GTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
genomic: AAGTGAAGATTCTGAAGGCTCCAAAGTTCGATCTGATGAAGCTCATGGAGgtgagtgttg ... ggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTC
ctctgggattctaagtccagagtgtccacttttgttcgatctcttggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCGGAGATGATGCCGAGACTGAAGCTGTCACCGAGCCAGTTCCTGGGGCTT
tctcttg CT-rich tract
attctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttggttgaaacgttacatgctcttttgttgctgtctaagattatccatcagcataccatcactctgtataaactgcctaattattgataacatttagtgaagctcacggctgccagataattaagaattcgttgtctctgggattctaagtccagagtgtccacttttgttcgatctcttggtttcatagGTTCACGGCGACTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCTGTCGGAGATGATGCCGAGACTGAAGCTGTCACCGAGCCAGTTCCTGGGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG