ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC

Basic information

species	Physcomitrella patens
transcript	PP1S92_47V6.2
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 1

------------------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                       |||    ||  | |   | |  ||| |          |  || |   | |  ||    || |   ||  | |||||     || ||| | |  ||||| |||||||| ||  | |||||||||||||||||||||||||| ||     | ||||  |       | | || || ||| || ||| | |||||    || 
gtgagtgccctcctgcccaccgttctctcctcctcctcctgcttagagatccaaaccccttcatttttactcgctagtcgctacatgggt--tgttgatgcagctt-tgcatttcttgcagCGTCGATCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAA-GACCCTCGTGTCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 3'ss of exon 1

------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgatttttt--ttgtgcgtctt--gtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       ||| |||     | ||    | | ||  |   ||       |   | | |||||  |      |    |||     ||  ||  |  | || ||| ||   ||||| |||||||||||  | |||||||| ||||||||||||||||| ||     | |||| ||  | |  ||| ||||| ||| || ||| | |||||    |||
gtgagtttacctctcccccccaccctcc-tcgtccgtccttcttcctttcgctcttggttgccatggcgcatgggtgttgatgtggcttcctgctcgttcgtttttcttgcagCGTCGATCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCCCCGTCGGTGTTCAACGTGAGAAACGTCGGGAA-GACGCTCGTGTCCAGGACACAGGGC

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G703354_T01 (Zea mays), 3'ss of exon 1

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    |    |  ||       |||  |      ||  | || | |      ||||      ||   | | |||   | |  |       |   | ||||||||||| ||||| |||  |||||||||| |||||||||||||||| ||     |||||| ||       | | || || ||| || ||| | |||||    |||
--gtgagctatctcccttcctcgtcatctttcgttctgcggatatgaaaccgttg-----gttctgacccgtcccttggtgtggccacatctcttttgtgcagTGTGGATCCATTCAGCAAGAAGGACCGGTATGATATCAAGGCTCCGCCAGTCTTCAGCGTGCGCAACATCGGCAA-GACCCTGGTGTCCAGGACACAGGGC

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T05 (Zea mays), 3'ss of exon 2

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC------
                                                                          |      ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    ||       
--------------------------------------------------------------------------tgcgtggttgcgttacttcttttatgcagcgtcgaccctttctctaagaaggattggtatgacatcaaggcaccgtcggtgttcagtgtgcgcaacatcgGGAA-GACTCTCGTATCCAGGACACAGGGTACCAGG

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T08 (Zea mays), 3'ss of exon 1

----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | ||   |||||       |||  |   || |  |    | |  | ||    | |  ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtgg--ttgcgttacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T04 (Zea mays), 3'ss of exon 1

---gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  ||  | |||  ||   | |  |  |||    | | | ||| | |   || |  |    | |  | ||    | |  ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
ctgttatatcccagttcttcagatcttacttgggtc---gattgctttctttct-ttatccgttgctgatgcggttgcgtgg--ttgcgttacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T05 (Zea mays), 3'ss of exon 1

----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | |    |||||       |||  |   || |  |    | |  ||||  | | |  ||    |     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||                             
gttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtgg--ttgcgatacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGG-----------------------------

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T03 (Zea mays), 3'ss of exon 1

----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | |    |||||       |||  |   || |  |    | |  ||||  | | |  ||    |     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtgg--ttgcgatacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G145258_T01 (Zea mays), 3'ss of exon 1

-----------------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                  ||  ||  | |||  || |   |||   |  | | | | | ||||| |   || |  |    | |  | ||  | | |  ||   ||       || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttca-gatcttgcttg--tgtcgattgctttttttct-ttatccgttgctgatgcggttctgtgg--ttgcgttacatcatttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G013457_T01 (Zea mays), 3'ss of exon 1

------gtacgtctaaattcaacatggcgttgtgaggt-ttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattg-attttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       | | |  |  |||  |  |   ||   |  | | | |||   ||  |  |  |   |||| | |     ||   |  ||  | | | ||     | |  | ||| |||||||| ||||| ||||||||||||||||| |||||||| ||     ||||||  |       | ||||||| |||||| ||| | |||||    || 
gtaagtttgcttgcatgttcttcccgttcttcacatctatctcggtcaattgcttcgtttctggagcttctgctgatgcggttgtgtgtctgtgttccttttgtcttacagCGTCGATCCCTTCTCTAAGAAGGACTGGTATGACATCAAGGCCCCATCGGTCTTCAGTGTGCGCAACATTGGGAA-GACTCTCGTGTCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 2

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       ||| |     ||| | |    |   || |    | ||| |    ||  |  | || ||    |     ||||| || || ||   |    ||||||||| ||||| |||||||||||||| ||||||||  | ||||| ||   |   |||||| | | |    | || |||||||||||  | ||||||   || 
------gtaagtaacctatgtcctgaataaaattct--cagatttctaattgtaatctgtatatagtgttcgtg-attgaattgttatggatg----gtgcagTGTTGATCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 3'ss of exon 2

-----------------gtacgtctaa-attcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaact-gtcat---------attgattttttttgtgcgtc---ttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                  ||  |||    ||   | |  |  ||||      || ||||   | | ||   | |||| || | || ||  ||||         |||| || ||||||    |    |  |||||||| ||||||||||||||||| || ||||||||| | ||||| ||    |||||||| || | |    | |||||||| |||||  | || |||   || 
gtaagtttttctgaatcttatttctcttgttttccttaacaatgtgtatgaattagtggccatgt-tgaagtatgagaatatgaatcttatcatttgtgattgattggttgtttttgaaaattgaatgttgcagTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATCTTCACTCACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 3'ss of exon 1

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCAC-GCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                                 |  |  ||   | | || |       |    |   |  |||   ||  |  |||| ||||      ||||    || || ||| ||||||||||||||||||| |||||||| ||||  || ||||| |       ||| ||| ||||| || ||||| |||||    || 
--------------------------------gtaagtcggccatctctgcgcccgcgacccccacctcgctcac-ctggctcgttttctgcgc-----gcagCTCGGACCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCACTGTCCGCAACGT-GGGCAAGACCCTGGTGACCAGGACGCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ11589 (Selaginella moellendorffii), 3'ss of exon 2

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtg-cagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC-
                                                      || ||  |||    | | | | |||  |  ||   | | ||||    ||||||||| ||||||||||||||||| ||||| ||| |||||||       |  ||||          | | || ||||| |||||||| || || || ||  
------------------------------------------------------gtaagtgtttggcgcag-cgttttgcctgcttgatttcttctttcctcagTGTCGACCCTTTCTCCAAGAAGGATTGGTACGATGTCAAGGCCATGTCCACTTTCAATGTTCGTCAGATCGGGAAGACGCTTGTGACGAGAAC-GCAGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|67571386|gb|BJ944210.1|BJ944210

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18347427|gb|BJ179473.1|BJ179473

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18347038|gb|BJ179084.1|BJ179084

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|100450921|gb|CJ974507.1|CJ974507

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18366867|gb|BJ198947.1|BJ198947

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18373995|gb|BJ205573.1|BJ205573

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|162185712|gb|FC361566.1|FC361566

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|162216969|gb|FC393087.1|FC393087

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|100360481|gb|BY984147.1|BY984147

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18351838|gb|BJ183890.1|BJ183890

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|19788665|gb|BQ040844.1|BQ040844

EST:     AAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: AAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18345407|gb|BJ177450.1|BJ177450

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|208372026|gb|DC936226.1|DC936226

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

EST: gi|18371606|gb|BJ203208.1|BJ203208

EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 31 (upstream exon), 33 (downstream exon)
Score: 81

CCGTCTTGCCAGCCGCTGCTTCTGCCTCGTCCTCTGCAGCCATGGCGGTCGGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC