1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatagcatttttatttaatgtgatgcaaaaatttggattgtatcggcgtgttgtgtacccctaactccacttttctaattctgtgtaggttgcccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGATGGTCACAGTCCTTCAAAGATGCGAGC
species | Physcomitrella patens |
transcript | PP1S92_44V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTNGGCGGTGTTGAEST: gi|162267210|gb|FC442622.1|FC442622
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|208371902|gb|DC951866.1|DC951866
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: GGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTNGGCGGTGTTGAEST: gi|208397261|gb|DC920615.1|DC920615
genomic: GGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGNTTTTATACC GTTTACCACGGATGTGGAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|162268964|gb|FC445456.1|FC445456
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|162201174|gb|FC377681.1|FC377681
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|162271607|gb|FC447492.1|FC447492
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|67578191|gb|BJ950358.1|BJ950358
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|15728658|gb|BI740903.1|BI740903
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGAEST: gi|162261907|gb|FC437311.1|FC437311
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTNGGCGGTGTTGAEST: gi|162261908|gb|FC437312.1|FC437312
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
gtgttgtgtacccctaactccacttttctaattctgtgtaggttgcccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGATGGTCACAGTCCTTCAAAGATGCGAGC
ttctaat putative branch site (score: 48)
ttgcccct putative PPT
ttttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatagcatttttatttaatgtgatgcaaaaatttggattgtatcggcgtgttgtgtacccctaactccacttttctaattctgtgtaggttgcccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGATGGTCACAGTCCTTCAAAGATGCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG