1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcacatgtacacacatatcttctagacaagatatcgactgagaggaattagggtcagaggttgaattcgctgttatcaatctctttgtattatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTGGCTGGTTCGTGTTATCTTGCGTTCTTAGCATCGTCATAGGCCACGGAT
species | Physcomitrella patens |
transcript | PP1S91_80V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|162274752|gb|FC450506.1|FC450506
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|162169149|gb|FC346039.1|FC346039
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|7148124|gb|AW510046.1|AW510046
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|208377551|gb|DC922654.1|DC922654
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|37830150|gb|BJ588162.1|BJ588162
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|208392838|gb|DC957105.1|DC957105
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|162274753|gb|FC450507.1|FC450507
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACEST: gi|208395875|gb|DC920325.1|DC920325
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGAC
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|19790325|gb|BQ041812.1|BQ041812
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|162165178|gb|FC341160.1|FC341160
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTEST: gi|162201002|gb|FC378133.1|FC378133
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGAEST: gi|208362982|gb|DC946893.1|DC946893
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGA
EST: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTT GTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
genomic: CTTACGAGGCTGATCTAACACAGCGGCTCCAAGACCCCACAACTCTCGTTgtaggtttcc ... ttatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCT
gaattagggtcagaggttgaattcgctgttatcaatctctttgtattatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTGGCTGGTTCGTGTTATCTTGCGTTCTTAGCATCGTCATAGGCCACGGAT
tttgtattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcacatgtacacacatatcttctagacaagatatcgactgagaggaattagggtcagaggttgaattcgctgttatcaatctctttgtattatgcacagGTGCCGCCGGAAGACGACGGAGTAAACGACCAAGTGGGCCTCTTCTTCGCTGGCTGGTTCGTGTTATCTTGCGTTCTTAGCATCGTCATAGGCCACGGAT
- cacatgt