1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaacagcttattcgtgtggtttcgaatccacccgattcgtgctcgttataacagaagaagagcttcatgataagtatcttaccgtcgttttgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTCGTCGTCAGAG
species | Physcomitrella patens |
transcript | PP1S91_80V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|162274752|gb|FC450506.1|FC450506
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208356782|gb|DC906444.1|DC906444
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208377551|gb|DC922654.1|DC922654
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|37830150|gb|BJ588162.1|BJ588162
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTNTCATCAATGAAGAAAATATTTTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208392838|gb|DC957105.1|DC957105
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|162274753|gb|FC450507.1|FC450507
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208377095|gb|DC936827.1|DC936827
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208395875|gb|DC920325.1|DC920325
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208399601|gb|DC908782.1|DC908782
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|162201002|gb|FC378133.1|FC378133
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|100452748|gb|CJ975424.1|CJ975424
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|100446911|gb|CJ971210.1|CJ971210
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAA-TATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGANGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTEST: gi|208362982|gb|DC946893.1|DC946893
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
ttataacagaagaagagcttcatgataagtatcttaccgtcgttttgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTCGTCGTCAGAG
tcgtttt CT-rich tract
ataagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacagcttattcgtgtggtttcgaatccacccgattcgtgctcgttataacagaagaagagcttcatgataagtatcttaccgtcgttttgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTCGTCGTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC